Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'29-Segment pdb2d3o10.i2230-2260
Source: [PDB-id:chain] 2d3o:0 (&rarr PDB)
Source: Information STRUCTURE OF RIBOSOME BINDING DOMAIN OF THE TRIGGER FACTOR ON THE 50S RIBOSOMAL SUBUNIT FROM D. RADIODURANS
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.35 ANGSTROMS.
Position (2230, 2260)
Primary structure ('_': anchors) _GUAGAGCGCAAAGGUAGAAGGUGGCUUGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		20: C4'-exo, 23: C2'-exo, 29: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 6 7 ↑
3 7 8 ↑
4 9 10 ↑
5 11 12 ↑
6 12 13 ↑
7 13 14 ↑
8 14 15 ↑
9 19 21 ↑
10 21 22 ↑
11 22 23 ↑
12 24 25 ↑
13 25 26 ↑
14 26 27 ↑
15 29 31 →
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 17 Bifurcated/O2' ?
2 5 6 Hoogsteen/O2' ?
3 8 15 Watson-Crick/Watson-Crick cis
4 15 20 Watson-Crick/O2' ?
5 17 19 C/O2' ?
6 19 20 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters