Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-1-Internal Loop pdb2d1bFA.n8-30
Source: [PDB-id:chain] 2d1b:A (&rarr PDB)
Source: Information SOLUTION RNA STRUCTURE MODEL OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP DIMER
Source: Compound RNA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (6, 34), (8, 30)
Primary structure ('_': anchors) _AGG_-_G_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-endo, 3: C2'-exo, 5: C3'-exo, 6: C2'-exo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4
2 4 5
3 6 7
4 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 4 7 Watson-Crick/Watson-Crick cis
3 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters