Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Hairpin pdb2cky1A.e54-61
Source: [PDB-id:chain] 2cky:A (&rarr PDB)
Source: Information STRUCTURE OF THE ARABIDOPSIS THALIANA THIAMINE PYROPHOSPHATE RIBOSWITCH WITH ITS REGULATORY LIGAND
Source: Compound NUCLEIC ACID
Source: Resolution 2.90 ANGSTROMS.
Position (54, 61)
Primary structure ('_': anchors) _GUAAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: C4'-exo, 7: C2'-exo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 4 5 ↑
4 5 6 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 3 5 Hoogsteen/O2' ?
3 3 6 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters