Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'13-Segment pdb2b9p1A.i2339-2353
Source: [PDB-id:chain] 2b9p:A (&rarr PDB)
Source: Information 50S RIBOSOMAL SUBUNIT FROM A CRYSTAL STRUCTURE OF THE RIBOSOME IN COMPLEX WITH TRNAS AND MRNA WITH A STOP CODON IN THE A-SITE. THIS FILE CONTAINS THE 50S SUBUNIT FROM A CRYSTAL STRUCTURE OF THE RIBOSOME IN COMPLEX WITH TRNAS AND MRNA WITH A STOP CODON IN THE A-SITE AND IS DESCRIBED IN REMARK 400.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 6.46 ANGSTROMS.
Position (2339, 2353)
Primary structure ('_': anchors) _AUCAACGGAUAAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 2: C4'-exo, 3: C1'-endo, 4: C4'-exo, 6: C2'-exo, 7: C2'-exo, 9: C4'-exo, 10: C4'-exo, 12: O4'-endo, 14: C2'-exo, 15: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		9: syn, 10: syn, 14: syn
Tertiary structure: Stacked bases None
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 5 Hoogsteen/Hoogsteen cis y
2 8 9 C/O2' ?
3 11 12 Sugar/O2' ?
4 11 13 O2'/Watson-Crick ?
5 11 14 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters