Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'10-Hairpin pdb2b9p1A.e133-144
Source: [PDB-id:chain] 2b9p:A (&rarr PDB)
Source: Information 50S RIBOSOMAL SUBUNIT FROM A CRYSTAL STRUCTURE OF THE RIBOSOME IN COMPLEX WITH TRNAS AND MRNA WITH A STOP CODON IN THE A-SITE. THIS FILE CONTAINS THE 50S SUBUNIT FROM A CRYSTAL STRUCTURE OF THE RIBOSOME IN COMPLEX WITH TRNAS AND MRNA WITH A STOP CODON IN THE A-SITE AND IS DESCRIBED IN REMARK 400.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 6.46 ANGSTROMS.
Position (133, 144)
Primary structure ('_': anchors) _GCGGGAACGC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C4'-exo, 5: C2'-exo, 9: C2'-exo, 12: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn, 5: syn, 6: syn, 11: syn
Tertiary structure: Stacked bases None
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis y
2 2 3 O2'/C ?
3 2 4 O2'/Bifurcated ?
4 4 11 Watson-Crick/C cis y
5 5 6 O2'/Bifurcated ?
6 11 12 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters