Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb2b9oFA.n563-736
Source: [PDB-id:chain] 2b9o:A (&rarr PDB)
Source: Information 30S RIBOSOMAL SUBUNIT, TRNAS AND MRNA FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX WITH A STOP CODON IN THE A-SITE. THIS FILE CONTAINS THE 30S SUBUNIT, TRNAS AND MRNA FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX WITH A STOP CODON IN THE A-SITE AND IS DESCRIBED IN REMARK 400.
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 6.46 ANGSTROMS.
Position (559, 740), (563, 736)
Primary structure ('_': anchors) _GAG_-_GUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C4'-exo, 3: C2'-exo, 4: C2'-exo, 8: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 7
4 4 5
5 4 9 &larr
6 6 7
7 7 8
8 9 10
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 2 9 Hoogsteen/Sugar trans y
3 4 7 O2'/Bifurcated ?
4 4 8 Bifurcated/O2' ?
5 5 6 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters