Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-5-Internal Loop pdb2b9m1A.n134-168
Source: [PDB-id:chain] 2b9m:A (&rarr PDB)
Source: Information 30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF2 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX. THIS FILE CONTAINS THE 30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF2 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX". THE ENTIRE CRYSTAL STRUCTURE CONTAINS ONE 70S RIBOSOME, TRNAS, MRNA AND RELEASE FACTOR RF2 AND IS DESCRIBED IN REMARK 400.
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 6.76 ANGSTROMS.
Position (138, 164), (143, 158)
Primary structure ('_': anchors) _ACAA_-_CUAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
8: C4'-exo, 10: C4'-exo, 12: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 4 5
5 7 8
6 8 9
7 10 11
8 11 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 3 10 Hoogsteen/Watson-Crick trans
3 4 9 Watson-Crick/Hoogsteen trans
4 6 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters