Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Segment pdb2b9m1A.i839-854
Source: [PDB-id:chain] 2b9m:A (&rarr PDB)
Source: Information 30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF2 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX. THIS FILE CONTAINS THE 30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF2 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX". THE ENTIRE CRYSTAL STRUCTURE CONTAINS ONE 70S RIBOSOME, TRNAS, MRNA AND RELEASE FACTOR RF2 AND IS DESCRIBED IN REMARK 400.
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 6.76 ANGSTROMS.
Position (839, 854)
Primary structure ('_': anchors) _GCGUUAAGCGCGCC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 3: C2'-exo, 5: C4'-endo, 6: O4'-endo, 7: C1'-exo, 8: C4'-exo, 10: C4'-exo, 12: C2'-exo, 13: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 7 9
4 9 10
5 10 11
6 11 12
7 13 14
8 15 16
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 8 Bifurcated/O2' ?
2 3 8 Hoogsteen/O2' ?
3 4 7 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters