Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-4-Internal Loop pdb2b641A.n1230-1261
Source: [PDB-id:chain] 2b64:A (&rarr PDB)
Source: Information 30S RIBOSOMAL SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF1 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX. THIS FILE CONTAINS THE 30S SUBUNIT, TRNAS, MRNA AND RELEASE FACTOR RF1 FROM A CRYSTAL STRUCTURE OF THE WHOLE RIBOSOMAL COMPLEX". THE ENTIRE CRYSTAL STRUCTURE CONTAINS ONE 70S RIBOSOME, TRNAS, MRNA AND RELEASE FACTOR RF1 AND IS DESCRIBED IN REMARK 400.
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 5.90 ANGSTROMS.
Position (1232, 1259), (1235, 1254)
Primary structure ('_': anchors) _AU_-_UAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C4'-exo, 3: C4'-exo, 5: C4'-exo, 7: O4'-endo, 8: C1'-exo, 9: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn, 6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 4 Sugar/O2' ?
2 1 10 Watson-Crick/Watson-Crick cis
3 2 7 Bifurcated/O2' ?
4 4 5 Watson-Crick/Watson-Crick cis
5 5 10 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters