Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-7-Internal Loop pdb2awbFA.n78-96
Source: [PDB-id:chain] 2awb:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Source: Compound 5S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.46 ANGSTROMS.
Position (70, 104), (78, 96)
Primary structure ('_': anchors) _GAGAGUA_-_GAUGGUA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 16
3 3 4
4 4 5
5 5 6
6 6 7
7 7 11
8 8 9
9 10 11
10 12 13
11 13 14
12 14 15
13 15 16
14 17 18
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 18 Watson-Crick/Watson-Crick cis
2 2 17 Bifurcated/O2' trans
3 3 16 Watson-Crick/Hoogsteen trans
4 4 15 Watson-Crick/Bifurcated trans
5 6 13 Bifurcated/Watson-Crick trans
6 7 12 Hoogsteen/Watson-Crick trans
7 8 11 O2'/Bifurcated trans
8 9 10 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters