Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'15-Hairpin pdb2awb1B.e2599-2615
Source: [PDB-id:chain] 2awb:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 50S SUBUNIT OF THE SECOND 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.46 ANGSTROMS.
Position (2599, 2615)
Primary structure ('_': anchors) _UAGUACGAGAGGACC_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 4: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		15: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 &larr
3 3 5 →
4 4 13 &larr
5 6 7 ↑
6 6 14 →
7 9 10 ↑
8 10 11 ↑
9 11 12 ↑
10 12 13 ↑
11 14 15 &larr
12 15 16 →
13 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis
2 3 15 O2'/Bifurcated trans
3 4 5 Hoogsteen/Sugar cis y
4 4 14 O2'/Bifurcated ?
5 5 13 Watson-Crick/O2' ?
6 5 14 Hoogsteen/Watson-Crick trans
7 6 13 Sugar/Hoogsteen trans
8 7 12 Watson-Crick/Watson-Crick cis
9 8 10 O2'/Sugar ?
10 8 11 O2'/Bifurcated trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters