Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'17-Segment pdb2aw41B.i2228-2246
Source: [PDB-id:chain] 2aw4:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF THE BACTERIAL RIBOSOME FROM ESCHERICHIA COLI AT 3.5 A RESOLUTION. THIS FILE CONTAINS THE 50S SUBUNIT OF ONE 70S RIBOSOME. THE ENTIRE CRYSTAL STRUCTURE CONTAINS TWO 70S RIBOSOMES AND IS DESCRIBED IN REMARK 400.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.46 ANGSTROMS.
Position (2228, 2246)
Primary structure ('_': anchors) _GCACGAAGGUUGGCUAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C4'-exo, 7: C4'-exo, 8: C2'-endo, 16: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		6: syn, 7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 4 ↑
3 4 5 ↑
4 7 9 →
5 9 10 ↑
6 10 11 ↑
7 11 12 ↑
8 12 13 ↑
9 13 14 ↑
10 14 15 ↑
11 15 16 ↑
12 18 19 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 8 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters