Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-3-Internal Loop pdb2aarF0.n1352-1547
Source: [PDB-id:chain] 2aar:0 (&rarr PDB)
Source: Information STRUCTURE OF TRIGGER FACTOR BINDING DOMAIN IN BIOLOGICALLY HOMOLOGOUS COMPLEX WITH EUBACTERIAL RIBOSOME.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.50 ANGSTROMS.
Position (1360, 1539), (1364, 1532)
Primary structure ('_': anchors) _GUUGAA_-_GGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		11: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 7 8 ↑
4 7 9 →
5 12 13 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 12 Hoogsteen/Sugar trans
3 3 4 Hoogsteen/O2' ?
4 3 9 Sugar/O2' ?
5 3 10 Watson-Crick/O2' ?
6 3 12 O2'/Watson-Crick ?
7 4 5 Hoogsteen/O2' ?
8 8 9 Watson-Crick/Watson-Crick cis
9 11 12 Watson-Crick/O2' trans y
10 11 13 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters