Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-6-Internal Loop pdb2aar10.n1997-2132
Source: [PDB-id:chain] 2aar:0 (&rarr PDB)
Source: Information STRUCTURE OF TRIGGER FACTOR BINDING DOMAIN IN BIOLOGICALLY HOMOLOGOUS COMPLEX WITH EUBACTERIAL RIBOSOME.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (1998, 2131), (2004, 2124)
Primary structure ('_': anchors) _AGUCU_-_UGGCGG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
11: C4'-exo, 14: O4'-endo, 15: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
14: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 13 &larr
2 2 3
3 2 15
4 3 4
5 5 6
6 5 11
7 7 9
8 9 10
9 10 11
10 11 12
11 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 2 13 O2'/Bifurcated trans
3 3 12 Watson-Crick/Watson-Crick cis
4 5 10 Watson-Crick/Watson-Crick cis
5 6 9 Watson-Crick/Watson-Crick cis
6 7 8 Watson-Crick/Watson-Crick cis
7 13 15 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters