Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-2-2-0-5-Multiloop pdb2aar10.m538-1208
Source: [PDB-id:chain] 2aar:0 (&rarr PDB)
Source: Information STRUCTURE OF TRIGGER FACTOR BINDING DOMAIN IN BIOLOGICALLY HOMOLOGOUS COMPLEX WITH EUBACTERIAL RIBOSOME.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (543, 1203), (548, 631), (634, 772), (775, 1143), (1144, 1197)
Primary structure ('_': anchors) _GACU_-_GA_-_UU_-__-_CGGAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		4: O4'-endo, 8: O4'-endo, 9: C4'-exo, 10: C2'-exo, 13: C4'-exo, 18: C4'-exo, 19: O4'-endo, 20: O4'-endo, 23: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		19: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 4 10 →
3 7 9 &larr
4 8 9 ↑
5 11 12 ↑
6 14 17 ↓
7 19 20 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 23 Watson-Crick/Watson-Crick cis
2 2 21 Bifurcated/O2' ?
3 3 11 O2'/Watson-Crick trans y
4 5 9 O2'/Watson-Crick ?
5 6 7 Watson-Crick/Watson-Crick cis
6 7 9 O2'/Bifurcated ?
7 10 11 Watson-Crick/Watson-Crick cis y
8 14 15 Watson-Crick/Watson-Crick cis
9 16 17 Watson-Crick/Watson-Crick cis
10 19 20 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters