Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'14-Segment pdb2aar10.i2224-2239
Source: [PDB-id:chain] 2aar:0 (&rarr PDB)
Source: Information STRUCTURE OF TRIGGER FACTOR BINDING DOMAIN IN BIOLOGICALLY HOMOLOGOUS COMPLEX WITH EUBACTERIAL RIBOSOME.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (2224, 2239)
Primary structure ('_': anchors) _AGAAGGUGGCUUGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C4'-exo, 14: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
3: syn, 5: syn, 14: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 4
2 4 6
3 6 7
4 7 8
5 9 10
6 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 5 Bifurcated/O2' ?
2 4 5 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters