Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb2aar10.i1839-1862
Source: [PDB-id:chain] 2aar:0 (&rarr PDB)
Source: Information STRUCTURE OF TRIGGER FACTOR BINDING DOMAIN IN BIOLOGICALLY HOMOLOGOUS COMPLEX WITH EUBACTERIAL RIBOSOME.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (1839, 1862)
Primary structure ('_': anchors) _UCCUAAGGUAGCGAAAUUCCUU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		16: C2'-exo, 17: C4'-exo, 19: C4'-exo, 22: C4'-exo, 23: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		16: syn, 18: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 11 12 ↑
3 12 13 ↑
4 15 24 ↑
5 20 21 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 5 O2'/Watson-Crick ?
2 9 10 Hoogsteen/Sugar cis y
3 14 16 Watson-Crick/O2' ?
4 16 18 O2'/Hoogsteen ?
5 19 21 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters