Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'13-Hairpin pdb2aar10.e1437-1451
Source: [PDB-id:chain] 2aar:0 (&rarr PDB)
Source: Information STRUCTURE OF TRIGGER FACTOR BINDING DOMAIN IN BIOLOGICALLY HOMOLOGOUS COMPLEX WITH EUBACTERIAL RIBOSOME.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.50 ANGSTROMS.
Position (1437, 1451)
Primary structure ('_': anchors) _GUCAGAAAAUCUA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 6 10 &larr
3 7 8 ↑
4 9 10 ↑
5 12 13 ↑
6 13 14 ↑
7 14 15 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 15 Watson-Crick/Watson-Crick cis
2 4 5 C/O2' ?
3 6 12 Watson-Crick/Watson-Crick cis
4 8 10 Bifurcated/O2' ?
5 11 12 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters