Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-Segment pdb2a9x12.i6-10
Source: [PDB-id:chain] 2a9x:2 (&rarr PDB)
Source: Information TAR RNA RECOGNITION BY A CYCLIC PEPTIDOMIMETIC OF TAT PROTEIN
Source: Compound BIV TAR RNA
Source: Resolution NOT APPLICABLE.
Position (6, 10)
Primary structure ('_': anchors) _UGU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C4'-exo, 2: C1'-exo, 3: C2'-endo, 4: C2'-endo, 5: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3 ↑
2 2 3 ↓
3 3 5 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 5 Hoogsteen/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters