Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-4-Internal Loop pdb1zzn1B.n99-124
Source: [PDB-id:chain] 1zzn:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A GROUP I INTRON/TWO EXON COMPLEX THAT INCLUDES ALL CATALYTIC METAL ION LIGANDS.
Source: Compound 197-MER
Source: Resolution 3.37 ANGSTROMS.
Position (93, 129), (99, 124)
Primary structure ('_': anchors) _AAGCU_-_UGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 4 5
4 6 7
5 6 10
6 8 9
7 10 11
8 11 12
9 12 13
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 4 11 Watson-Crick/Watson-Crick cis
3 5 10 Watson-Crick/Watson-Crick cis
4 6 9 Watson-Crick/Watson-Crick cis
5 7 8 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters