Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-2-Internal Loop pdb1zhoFB.n1-38
Source: [PDB-id:chain] 1zho:B (&rarr PDB)
Source: Information THE STRUCTURE OF A RIBOSOMAL PROTEIN L1 IN COMPLEX WITH MRNA
Source: Compound MRNA
FLIPPED INTERNAL
Source: Resolution 2.60 ANGSTROMS.
Position (10, 29), (13, 22)
Primary structure ('_': anchors) _GCGAAA_-_GA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-endo, 4: C4'-exo, 5: C2'-endo, 10: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 10 →
3 3 4 ↑
4 6 7 ↑
5 7 8 ↑
6 7 9 →
7 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 2 11 Bifurcated/O2' trans
3 3 5 Hoogsteen/O2' ?
4 3 11 O2'/Watson-Crick ?
5 4 5 Hoogsteen/O2' ?
6 7 10 O2'/Watson-Crick ?
7 8 9 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters