Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'4-Hairpin pdb1zc51A.e17-22
Source: [PDB-id:chain] 1zc5:A (&rarr PDB)
Source: Information STRUCTURE OF THE RNA SIGNAL ESSENTIAL FOR TRANSLATIONAL FRAMESHIFTING IN HIV-1
Source: Compound HIV-1 FRAMESHIFT RNA SIGNAL
Source: Resolution NOT APPLICABLE.
Position (17, 22)
Primary structure ('_': anchors) _ACAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-endo, 4: O4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 2 6
4 4 5
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 2 5 Bifurcated/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters