Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'8-8-Internal Loop pdb1z5812.n1757-1810
Source: [PDB-id:chain] 1z58:2 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A COMPLEX OF THE RIBOSOME LARGE SUBUNIT WITH RAPAMYCIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.80 ANGSTROMS.
Position (1758, 1809), (1767, 1800)
Primary structure ('_': anchors) _GCCGGAAG_-_CCCGGUGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 2 20 →
4 4 5 ↑
5 5 6 ↑
6 5 15 →
7 6 7 ↑
8 9 10 ↑
9 11 12 ↑
10 12 13 ↑
11 15 16 ↑
12 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 20 Watson-Crick/Watson-Crick cis y
2 3 16 Watson-Crick/Watson-Crick cis y
3 7 9 Hoogsteen/O2' ?
4 10 11 Watson-Crick/Watson-Crick cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters