Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'27-Segment pdb1z5812.i943-971
Source: [PDB-id:chain] 1z58:2 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A COMPLEX OF THE RIBOSOME LARGE SUBUNIT WITH RAPAMYCIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.80 ANGSTROMS.
Position (943, 971)
Primary structure ('_': anchors) _UAAAUGAUCGCUCAGUGGUUAAGGAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 5 7 ↑
3 7 8 ↑
4 8 9 ↑
5 11 12 ↑
6 15 17 ↑
7 17 18 ↑
8 18 19 &larr
9 22 23 ↑
10 23 24 ↑
11 24 25 ↑
12 25 26 ↑
13 28 29 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 3 C/O2' ?
2 13 15 Watson-Crick/O2' ?
3 14 28 Bifurcated/O2' ?
4 16 18 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters