Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'22-Segment pdb1z5812.i729-752
Source: [PDB-id:chain] 1z58:2 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A COMPLEX OF THE RIBOSOME LARGE SUBUNIT WITH RAPAMYCIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.80 ANGSTROMS.
Position (729, 752)
Primary structure ('_': anchors) _UAGGAGUGAAAAGCUAACCGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		23: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 6 7 ↑
3 7 8 ↑
4 8 9 ↑
5 12 14 ↑
6 14 15 ↑
7 23 24 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 3 6 Sugar/O2' ?
2 4 16 O2'/Bifurcated ?
3 4 23 Hoogsteen/O2' ?
4 5 6 Hoogsteen/O2' ?
5 9 12 Bifurcated/O2' ?
6 11 12 Hoogsteen/O2' ?
7 13 14 Hoogsteen/O2' ?
8 19 24 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters