Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'27-Segment pdb1z5812.i555-583
Source: [PDB-id:chain] 1z58:2 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A COMPLEX OF THE RIBOSOME LARGE SUBUNIT WITH RAPAMYCIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.80 ANGSTROMS.
Position (555, 583)
Primary structure ('_': anchors) _GAGCUUAAGUUGAAAAACGGAGGCGGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		17: syn, 22: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 26 →
2 4 5 ↑
3 6 21 →
4 7 8 ↑
5 7 22 ↓
6 9 10 ↑
7 9 20 →
8 10 11 ↑
9 17 18 ↑
10 18 19 ↑
11 19 20 ↑
12 22 23 →
13 23 24 ↑
14 24 25 ↑
15 25 26 ↑
16 26 27 ↑
17 28 29 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 24 Watson-Crick/Watson-Crick cis y
2 5 23 Watson-Crick/Watson-Crick cis y
3 7 20 Watson-Crick/O2' ?
4 8 20 O2'/Bifurcated trans y
5 10 18 Hoogsteen/Watson-Crick cis y
6 21 23 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters