Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'25-Hairpin pdb1z5812.e162-188
Source: [PDB-id:chain] 1z58:2 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF A COMPLEX OF THE RIBOSOME LARGE SUBUNIT WITH RAPAMYCIN
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.80 ANGSTROMS.
Position (162, 188)
Primary structure ('_': anchors) _AGGGAACUGAAACAUCUCAGUACCU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		None
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 2 27 →
4 3 4 ↑
5 4 5 ↑
6 5 21 &larr
7 6 7 ↑
8 6 23 →
9 7 8 ↑
10 10 11 ↑
11 10 18 →
12 13 14 ↑
13 17 18 ↑
14 18 19 ↑
15 23 24 ↑
16 24 25 ↑
17 25 26 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 27 Watson-Crick/Watson-Crick cis
2 4 24 Watson-Crick/Watson-Crick cis y
3 5 23 Hoogsteen/Sugar trans
4 7 20 Bifurcated/O2' ?
5 8 19 Sugar/Hoogsteen trans y
6 10 17 Watson-Crick/Watson-Crick cis
7 11 13 O2'/Hoogsteen ?
8 11 14 O2'/Bifurcated ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters