Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-1-Internal Loop pdb1yncFA.n1-31
Source: [PDB-id:chain] 1ync:A (&rarr PDB)
Source: Information NMR STRUCTURE OF THE APOB MRNA STEM-LOOP AND ITS INTERACTION WITH THE C TO U EDITING APOBEC1 COMPLEMENTARY FACTOR
Source: Compound APOLIPOPROTEIN B MRNA
FLIPPED INTERNAL
Source: Resolution NOT APPLICABLE.
Position (6, 26), (8, 23)
Primary structure ('_': anchors) _GU_-_A_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-exo, 2: C1'-endo, 6: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 6
2 3 4
3 5 6
4 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 3 6 Watson-Crick/Watson-Crick cis
3 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters