Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Segment pdb1yls1B.i28-35
Source: [PDB-id:chain] 1yls:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF SELENIUM-MODIFIED DIELS-ALDER RIBOZYME COMPLEXED WITH THE PRODUCT OF THE REACTION BETWEEN N- PENTYLMALEIMIDE AND COVALENTLY ATTACHED 9- HYDROXYMETHYLANTHRACENE
Source: Compound RNA DIELS-ALDER RIBOZYME
Source: Resolution 3.00 ANGSTROMS.
Position (28, 35)
Primary structure ('_': anchors) _AAUACU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
5: O4'-endo, 6: C2'-exo, 7: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 5 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 5 7 O2'/Sugar ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters