Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-4-Internal Loop pdb1yl4FA.n367-378
Source: [PDB-id:chain] 1yl4:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF 70S RIBOSOME WITH THRS OPERATOR AND TRNAS. 30S SUBUNIT. THE COORDINATES FOR THE 50S SUBUNIT ARE IN THE PDB ENTRY 1YL3
Source: Compound 16S RRNA
FLIPPED INTERNAL
Source: Resolution 5.50 ANGSTROMS.
Position (362, 381), (367, 378)
Primary structure ('_': anchors) _GA_-_CAAU_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo, 9: O4'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 5
3 5 6
4 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 O2'/Watson-Crick ?
2 1 10 Watson-Crick/Watson-Crick cis y
3 2 6 Watson-Crick/Watson-Crick cis
4 2 9 Bifurcated/Watson-Crick trans y
5 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters