Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'1-1-Internal Loop pdb1yl3FB.n11-114
Source: [PDB-id:chain] 1yl3:B (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF 70S RIBOSOME WITH THRS OPERATOR AND TRNAS. LARGE SUBUNIT. THE COORDINATES FOR THE SMALL SUBUNIT ARE IN THE PDB ENTRY 1YL4.
Source: Compound 5S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 5.50 ANGSTROMS.
Position (9, 116), (11, 114)
Primary structure ('_': anchors) _G_-_U_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 5: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 4
3 5 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 Watson-Crick/Watson-Crick cis
2 3 4 Watson-Crick/Watson-Crick cis
3 4 5 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters