Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-3-Internal Loop pdb1yl3FA.n888-937
Source: [PDB-id:chain] 1yl3:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF 70S RIBOSOME WITH THRS OPERATOR AND TRNAS. LARGE SUBUNIT. THE COORDINATES FOR THE SMALL SUBUNIT ARE IN THE PDB ENTRY 1YL4.
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 5.50 ANGSTROMS.
Position (889, 936), (893, 933)
Primary structure ('_': anchors) _AA_-_CAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
None
Bases with unusual glycosidic-bond configuration
(Standard: anti)
2: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 4
2 5 6
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 6 O2'/Watson-Crick cis y
2 1 9 Watson-Crick/Watson-Crick cis
3 4 5 Watson-Crick/Watson-Crick cis
4 7 8 Hoogsteen/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters