Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-5-Internal Loop pdb1yl31A.n863-963
Source: [PDB-id:chain] 1yl3:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF 70S RIBOSOME WITH THRS OPERATOR AND TRNAS. LARGE SUBUNIT. THE COORDINATES FOR THE SMALL SUBUNIT ARE IN THE PDB ENTRY 1YL4.
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 5.50 ANGSTROMS.
Position (869, 957), (875, 951)
Primary structure ('_': anchors) _GCUGA_-_GUGGA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 3: C4'-exo, 9: C2'-exo, 10: C4'-exo, 11: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 14 Watson-Crick/Watson-Crick cis
2 3 4 Hoogsteen/Sugar cis y
3 3 12 Watson-Crick/Watson-Crick cis
4 5 10 Watson-Crick/Watson-Crick cis
5 7 8 Watson-Crick/Watson-Crick cis
6 8 9 C/O2' ?
7 9 10 Hoogsteen/Hoogsteen cis y
8 11 12 O2'/Bifurcated ?
9 12 13 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters