Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-5-Internal Loop pdb1yjw10.n241-252
Source: [PDB-id:chain] 1yjw:0 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF QUINUPRISTIN BOUND TO THE G2099A MUTANT 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.90 ANGSTROMS.
Position (237, 258), (241, 252)
Primary structure ('_': anchors) _GAA_-_AAUGU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 3: C2'-endo, 8: C2'-endo, 9: C2'-endo, 10: C3'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		4: syn, 8: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 10 &larr
3 3 8 &larr
4 3 11 →
5 6 7 ↑
6 11 12 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 12 Watson-Crick/Watson-Crick cis
2 2 11 Hoogsteen/Sugar trans y
3 3 7 O2'/Watson-Crick ?
4 3 8 Bifurcated/O2' ?
5 3 10 Sugar/Hoogsteen trans
6 4 11 Watson-Crick/Watson-Crick cis
7 5 6 Watson-Crick/Watson-Crick cis
8 5 11 O2'/Sugar ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters