Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb1yijF0.n1068-1226
Source: [PDB-id:chain] 1yij:0 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF TELITHROMYCIN BOUND TO THE G2099A MUTANT 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 2.60 ANGSTROMS.
Position (1064, 1230), (1068, 1226)
Primary structure ('_': anchors) _GAG_-_UAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		1: C2'-exo, 2: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 3 ↑
2 3 8 →
3 4 5 ↑
4 6 7 ↑
5 7 8 ↑
6 9 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 2 Bifurcated/O2' ?
2 1 10 Watson-Crick/Watson-Crick cis
3 3 9 Hoogsteen/Watson-Crick trans
4 4 7 O2'/Bifurcated trans
5 4 8 Watson-Crick/O2' ?
6 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters