Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'10-Segment pdb1yij10.i472-483
Source: [PDB-id:chain] 1yij:0 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF TELITHROMYCIN BOUND TO THE G2099A MUTANT 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.60 ANGSTROMS.
Position (472, 483)
Primary structure ('_': anchors) _UGCAAAGUAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
1: C2'-endo, 6: C2'-endo, 8: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 4 5
3 5 7
4 6 7
5 6 8
6 10 11
7 11 12
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 2 6 Hoogsteen/Watson-Crick trans
2 3 5 Hoogsteen/O2' ?
3 3 6 O2'/Watson-Crick ?
4 3 7 Hoogsteen/Sugar trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters