Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'5-Hairpin pdb1yij10.e1023-1029
Source: [PDB-id:chain] 1yij:0 (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF TELITHROMYCIN BOUND TO THE G2099A MUTANT 50S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 2.60 ANGSTROMS.
Position (1023, 1029)
Primary structure ('_': anchors) _GUAAG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
6: C2'-endo, 7: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
6: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 3 4
3 4 5
4 5 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 4 Hoogsteen/O2' ?
3 2 5 O2'/Bifurcated trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters