Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-6-Internal Loop pdb1y69F0.n1154-1186
Source: [PDB-id:chain] 1y69:0 (&rarr PDB)
Source: Information RRF DOMAIN I IN COMPLEX WITH THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS
Source: Compound 23S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.33 ANGSTROMS.
Position (1155, 1185), (1162, 1181)
Primary structure ('_': anchors) _GGA_-_GGAGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		3: C2'-exo, 6: C2'-exo, 9: C4'-exo, 11: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		3: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 12 →
2 3 4 ↑
3 3 9 &larr
4 4 5 ↑
5 6 7 ↑
6 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 13 Watson-Crick/Watson-Crick cis
2 2 9 Watson-Crick/O2' ?
3 2 12 Watson-Crick/O2' ?
4 3 8 Sugar/Hoogsteen trans y
5 3 9 Bifurcated/O2' ?
6 4 7 O2'/Bifurcated trans
7 4 8 Watson-Crick/O2' ?
8 5 6 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters