Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-9-Internal Loop pdb1y6910.n801-885
Source: [PDB-id:chain] 1y69:0 (&rarr PDB)
Source: Information RRF DOMAIN I IN COMPLEX WITH THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.33 ANGSTROMS.
Position (806, 880), (816, 870)
Primary structure ('_': anchors) _UGUUGACCA_-_CGCGUUUAG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
22: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 6 7
2 7 8
3 8 9
4 10 11
5 10 14
6 12 13
7 20 21
8 21 22
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 22 Watson-Crick/Watson-Crick cis
2 6 20 O2'/Sugar ?
3 8 16 Watson-Crick/Watson-Crick cis
4 9 14 Watson-Crick/Watson-Crick cis
5 10 13 Watson-Crick/Watson-Crick cis y
6 11 12 Watson-Crick/Watson-Crick cis
7 14 15 Watson-Crick/Sugar cis y
8 15 17 Bifurcated/Hoogsteen cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters