Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'3-3-Internal Loop pdb1y6910.n1297-1328
Source: [PDB-id:chain] 1y69:0 (&rarr PDB)
Source: Information RRF DOMAIN I IN COMPLEX WITH THE 50S RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS
Source: Compound 23S RIBOSOMAL RNA
Source: Resolution 3.33 ANGSTROMS.
Position (1298, 1327), (1302, 1323)
Primary structure ('_': anchors) _UAA_-_GAU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		7: C2'-exo, 10: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 3 4 ↑
2 3 8 →
3 4 5 ↑
4 6 7 ↑
5 8 10 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 10 Watson-Crick/Watson-Crick cis
2 2 8 Bifurcated/Watson-Crick trans y
3 4 7 O2'/Bifurcated trans y
4 5 6 Watson-Crick/Watson-Crick cis
5 8 9 Hoogsteen/Sugar trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters