Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'10-Segment pdb1y271X.i30-41
Source: [PDB-id:chain] 1y27:X (&rarr PDB)
Source: Information G-RIBOSWITCH-GUANINE COMPLEX
Source: Compound BACILLUS SUBTILIS XPT
Source: Resolution 2.40 ANGSTROMS.
Position (30, 41)
Primary structure ('_': anchors) _AAGUUUCUAC_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 5: C2'-endo, 6: C2'-endo, 7: C1'-exo, 8: C2'-exo, 12: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 2 3
2 3 4
3 8 9
4 9 10
5 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 4 11 Watson-Crick/Watson-Crick cis
2 5 9 Hoogsteen/Watson-Crick trans y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters