Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1y271X.e18-26
Source: [PDB-id:chain] 1y27:X (&rarr PDB)
Source: Information G-RIBOSWITCH-GUANINE COMPLEX
Source: Compound BACILLUS SUBTILIS XPT
Source: Resolution 2.40 ANGSTROMS.
Position (18, 26)
Primary structure ('_': anchors) _GAUAUGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-exo, 4: C2'-endo, 5: C2'-endo, 6: C2'-endo, 7: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 2 9 →
4 3 4 ↑
5 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 3 7 O2'/Sugar ?
3 4 7 Sugar/Sugar cis y
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters