Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1y0q1A.e204-214
Source: [PDB-id:chain] 1y0q:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF AN ACTIVE GROUP I RIBOZYME-PRODUCT COMPLEX
Source: Compound GROUP I RIBOZYME
Source: Resolution 3.60 ANGSTROMS.
Position (204, 214)
Primary structure ('_': anchors) _AGUAACGAA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C2'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 5 6
5 6 7
6 7 8
7 8 9
8 9 10
9 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 10 Watson-Crick/Watson-Crick cis
3 4 6 Hoogsteen/O2' ?
4 4 7 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters