Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'7-Hairpin pdb1xwu1A.e4-12
Source: [PDB-id:chain] 1xwu:A (&rarr PDB)
Source: Information SOLUTION STRUCTURE OF ACAUAGA LOOP
Source: Compound 5'-
Source: Resolution NOT APPLICABLE.
Position (4, 12)
Primary structure ('_': anchors) _ACAUAGA_
Bases with unusual sugar puckers
(Standard: C3'-endo)
2: C2'-exo, 4: C3'-exo, 5: C3'-exo, 6: O4'-endo, 7: C1'-exo, 8: C2'-endo, 9: C4'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
7: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 5 6
5 6 7
6 7 8
7 8 9
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 9 Watson-Crick/Watson-Crick cis
2 2 8 Watson-Crick/Watson-Crick cis y
3 3 4 Hoogsteen/O2' ?
4 3 7 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters