Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-7-Internal Loop pdb1xnqFA.n1091-1128
Source: [PDB-id:chain] 1xnq:A (&rarr PDB)
Source: Information STRUCTURE OF AN INOSINE-ADENINE WOBBLE BASE PAIR COMPLEX IN THE CONTEXT OF THE DECODING CENTER
Source: Compound 16S RIBOSOMAL RNA
FLIPPED INTERNAL
Source: Resolution 3.05 ANGSTROMS.
Position (1097, 1122), (1105, 1115)
Primary structure ('_': anchors) _GGCACU_-_UUGCCAG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
17: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
14: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 2 3
3 3 4
4 4 11
5 6 7
6 7 8
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 17 Watson-Crick/Watson-Crick cis y
2 3 14 Watson-Crick/O2' ?
3 5 17 Bifurcated/O2' ?
4 8 9 Watson-Crick/Watson-Crick cis
5 11 13 C/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters