Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'12-Segment pdb1xnq1A.i534-547
Source: [PDB-id:chain] 1xnq:A (&rarr PDB)
Source: Information STRUCTURE OF AN INOSINE-ADENINE WOBBLE BASE PAIR COMPLEX IN THE CONTEXT OF THE DECODING CENTER
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.05 ANGSTROMS.
Position (534, 547)
Primary structure ('_': anchors) _CGGAUUCACUGG_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		5: C1'-exo, 7: C2'-endo, 8: C2'-endo, 9: C4'-exo, 12: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn, 9: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 2 3 ↑
3 3 4 ↑
4 4 5 ↑
5 5 7 &larr
6 6 12 →
7 9 13 →
8 10 11 ↑
9 11 12 &larr
10 13 14 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 6 12 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters