Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'9-Hairpin pdb1xnq1A.e1328-1338
Source: [PDB-id:chain] 1xnq:A (&rarr PDB)
Source: Information STRUCTURE OF AN INOSINE-ADENINE WOBBLE BASE PAIR COMPLEX IN THE CONTEXT OF THE DECODING CENTER
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.05 ANGSTROMS.
Position (1328, 1338)
Primary structure ('_': anchors) _AUCAGCAUG_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C4'-exo, 6: C2'-exo, 8: C2'-endo, 9: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 5 6
3 8 10
4 10 11
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 11 Watson-Crick/Watson-Crick cis
2 2 4 Bifurcated/O2' ?
3 2 10 Watson-Crick/Watson-Crick cis
4 3 4 Bifurcated/O2' ?
5 3 8 Watson-Crick/Watson-Crick trans
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters