Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'16-Hairpin pdb1xmo1A.e486-503
Source: [PDB-id:chain] 1xmo:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF MNM5U34T6A37-TRNALYSUUU COMPLEXED WITH AAG-MRNA IN THE DECODING CENTER
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.25 ANGSTROMS.
Position (486, 503)
Primary structure ('_': anchors) _CAACUCCGUGCCAGCA_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		2: C2'-endo, 5: C2'-endo, 11: C2'-endo, 12: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		5: syn
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 &larr
2 3 4 ↑
3 5 6 ↑
4 6 7 ↑
5 7 8 ↑
6 8 9 ↑
7 9 10 ↑
8 10 11 ↑
9 13 14 ↑
10 14 15 ↑
11 15 16 ↑
12 16 17 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 18 Watson-Crick/Watson-Crick cis
2 10 13 Watson-Crick/O2' ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters