Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'6-Hairpin pdb1xmo1A.e1062-1069
Source: [PDB-id:chain] 1xmo:A (&rarr PDB)
Source: Information CRYSTAL STRUCTURE OF MNM5U34T6A37-TRNALYSUUU COMPLEXED WITH AAG-MRNA IN THE DECODING CENTER
Source: Compound 16S RIBOSOMAL RNA
Source: Resolution 3.25 ANGSTROMS.
Position (1062, 1069)
Primary structure ('_': anchors) _UUAAGU_
Bases with unusual sugar puckers
(Standard: C3'-endo) 		6: C2'-endo
Bases with unusual glycosidic-bond configuration
(Standard: anti) 		None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2 ↑
2 3 7 →
3 4 5 ↑
4 7 8 ↑
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 8 Watson-Crick/Watson-Crick cis
2 2 7 Watson-Crick/Watson-Crick cis
3 3 4 Hoogsteen/O2' ?
4 3 5 O2'/Watson-Crick ?
5 3 6 O2'/Watson-Crick ?
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters