Please cite:
Schudoma et al.,
Nucl. Acids Res. 38: 970-980.
DOI 10.1093/nar/gkp1010.
'2-1-Internal Loop pdb1xjrFA.n14-37
Source: [PDB-id:chain] 1xjr:A (&rarr PDB)
Source: Information THE STRUCTURE OF A RIGOROUSLY CONSERVED RNA ELEMENT WITHIN THE SARS VIRUS GENOME
Source: Compound S2M RNA
FLIPPED INTERNAL
Source: Resolution 2.70 ANGSTROMS.
Position (16, 35), (18, 32)
Primary structure ('_': anchors) _AG_-_A_
Bases with unusual sugar puckers
(Standard: C3'-endo)
3: C1'-exo
Bases with unusual glycosidic-bond configuration
(Standard: anti)
None
Tertiary structure: Stacked bases
# Position 1 Position 2 Stacking direction
1 1 2
2 1 6
3 2 4
4 5 6
5 6 7
Tertiary structure: Base-pairs
(anchor pairs)
# Position 1 Position 2 Edges Configuration Single?
1 1 7 Watson-Crick/Watson-Crick cis
2 2 6 Watson-Crick/Watson-Crick cis
3 4 5 Watson-Crick/Watson-Crick cis
Downloads Atom coordinates (PDB format)
Contact annotation (MC-Annotate format)
3D Structure Structure Graph
Structural Clusters